CDS

Accession Number TCMCG057C29736
gbkey CDS
Protein Id XP_018490175.1
Location complement(join(44647579..44647932,44648122..44650089,44650171..44650272,44650369..44650495,44650607..44650722,44650817..44651191))
Gene LOC108860825
GeneID 108860825
Organism Raphanus sativus

Protein

Length 1013aa
Molecule type protein
Topology linear
Data_file_division PLN
dblink BioProject:PRJNA344915
db_source XM_018634673.1
Definition PREDICTED: FIP1[III]-like protein [Raphanus sativus]

EGGNOG-MAPPER Annotation

COG_category A
Description pre-mRNA cleavage required for polyadenylation
KEGG_TC -
KEGG_Module M00097        [VIEW IN KEGG]
KEGG_Reaction R04786        [VIEW IN KEGG]
R04787        [VIEW IN KEGG]
R07510        [VIEW IN KEGG]
R09652        [VIEW IN KEGG]
R09653        [VIEW IN KEGG]
R09654        [VIEW IN KEGG]
KEGG_rclass RC01214        [VIEW IN KEGG]
RC01958        [VIEW IN KEGG]
RC03092        [VIEW IN KEGG]
RC03093        [VIEW IN KEGG]
BRITE ko00000        [VIEW IN KEGG]
ko00001        [VIEW IN KEGG]
ko00002        [VIEW IN KEGG]
ko01000        [VIEW IN KEGG]
ko03019        [VIEW IN KEGG]
KEGG_ko ko:K02293        [VIEW IN KEGG]
ko:K14405        [VIEW IN KEGG]
EC 1.3.5.5        [VIEW IN KEGG]        [VIEW IN INGREDIENT]
KEGG_Pathway ko00906        [VIEW IN KEGG]
ko01100        [VIEW IN KEGG]
ko01110        [VIEW IN KEGG]
ko03015        [VIEW IN KEGG]
map00906        [VIEW IN KEGG]
map01100        [VIEW IN KEGG]
map01110        [VIEW IN KEGG]
map03015        [VIEW IN KEGG]
GOs GO:0005575        [VIEW IN EMBL-EBI]
GO:0005622        [VIEW IN EMBL-EBI]
GO:0005623        [VIEW IN EMBL-EBI]
GO:0005634        [VIEW IN EMBL-EBI]
GO:0005654        [VIEW IN EMBL-EBI]
GO:0005847        [VIEW IN EMBL-EBI]
GO:0005849        [VIEW IN EMBL-EBI]
GO:0006139        [VIEW IN EMBL-EBI]
GO:0006378        [VIEW IN EMBL-EBI]
GO:0006379        [VIEW IN EMBL-EBI]
GO:0006396        [VIEW IN EMBL-EBI]
GO:0006397        [VIEW IN EMBL-EBI]
GO:0006725        [VIEW IN EMBL-EBI]
GO:0006807        [VIEW IN EMBL-EBI]
GO:0008150        [VIEW IN EMBL-EBI]
GO:0008152        [VIEW IN EMBL-EBI]
GO:0009987        [VIEW IN EMBL-EBI]
GO:0010467        [VIEW IN EMBL-EBI]
GO:0016070        [VIEW IN EMBL-EBI]
GO:0016071        [VIEW IN EMBL-EBI]
GO:0031123        [VIEW IN EMBL-EBI]
GO:0031124        [VIEW IN EMBL-EBI]
GO:0031974        [VIEW IN EMBL-EBI]
GO:0031981        [VIEW IN EMBL-EBI]
GO:0032991        [VIEW IN EMBL-EBI]
GO:0034641        [VIEW IN EMBL-EBI]
GO:0043170        [VIEW IN EMBL-EBI]
GO:0043226        [VIEW IN EMBL-EBI]
GO:0043227        [VIEW IN EMBL-EBI]
GO:0043229        [VIEW IN EMBL-EBI]
GO:0043231        [VIEW IN EMBL-EBI]
GO:0043233        [VIEW IN EMBL-EBI]
GO:0043631        [VIEW IN EMBL-EBI]
GO:0044237        [VIEW IN EMBL-EBI]
GO:0044238        [VIEW IN EMBL-EBI]
GO:0044422        [VIEW IN EMBL-EBI]
GO:0044424        [VIEW IN EMBL-EBI]
GO:0044428        [VIEW IN EMBL-EBI]
GO:0044446        [VIEW IN EMBL-EBI]
GO:0044451        [VIEW IN EMBL-EBI]
GO:0044464        [VIEW IN EMBL-EBI]
GO:0046483        [VIEW IN EMBL-EBI]
GO:0070013        [VIEW IN EMBL-EBI]
GO:0071704        [VIEW IN EMBL-EBI]
GO:0090304        [VIEW IN EMBL-EBI]
GO:0090305        [VIEW IN EMBL-EBI]
GO:0090501        [VIEW IN EMBL-EBI]
GO:0098787        [VIEW IN EMBL-EBI]
GO:0098789        [VIEW IN EMBL-EBI]
GO:1901360        [VIEW IN EMBL-EBI]

Sequence

CDS:  
ATGGATTCCACCGATGACGATTTTGGTGAGCTGTACGTCGACGACAAGGCTCACGCGACTGCTTCCTTCGCCGGCGATGTCGTCGGATGCGAAGAACCGGAGCGTGCTTCGATTTCCGGCGAGAACGAGGGTTTCGAAGTGCCAGTGAAACCTGAATCGCAAGGCGAAGAGAAGAAACTCGACGTGGTGGTGGTGGATAATAAGGATTCGAGTCCGTGCGTCGACGCTGTGAATCGGACCGAGGCGAAGGAAGAATCGGAGTACAGTGACAGTGACGATGGTTTGAATATAGTGCTGAAAGAAGACGATTCGAAAGCTTTTCCCGTTGCTTTTGGCTCCAACAGAAACAATCAGAAACGGGGGAGTGGAAACTGGTGCACAATGCCAAGTAGTGGGATGGTTAATGGACGCATGACAATGGAAGCTTCTTCAGCTAATCAGTCTCTGGGAATACCTCAATGTGGATTTAATTTCTCACATACTTGGTCCAGGGCAACAATCGATGCAAATTTCAATGTGTTTGAGAAAAAGCCATGGAGGAATCCTGGTATGGATGTCAATGATTTCTTCAATTTTGGATTTAACGAGCAGAGCTGGAGAGATTATTGGAACCCGTTGGTAAAAGGAAGGGCGATTGAGGTTGAAGGTGGAACTTTTGAACGCACACCATCTGTGGATTTGCGTTATCCACGTGATTTAGACCCTGACGTGGTGATACAGATCCCGGTGACTAATGATCTTGAGGAGCTATCAAGCATGGCACATGTGGAAACAAGGTCTCTCAGCAAAACATCAAATGGAGCATCTGTAAGTGAGAAGTTTCATTCAGATATTGGGGAGGATCTGCTTTCATCTGGTGATTCGATGAAAGAAGAGGTTTCAGTTGGGTGTGAAAACGAAAAGACTGGAAGTTTCAGAGGCGAGCAATCTCCTTCAAAAGAGAATTACCGCAGCAGGGAAGTAACACCTTGTGATAAGGAAATTATTGAGGAGGAGAAAGAAGAGACTTGTTGGAGTTCAGATAAGGCGGATTCATCCTCAGTGGAAAGGGAATCTTCTCTTAGAGATCACTTTCGTTGTAGCCCTACCTCTTCATATTCTGTTGGTAAAACTGAGGAATCCGAAGATTCCGCAACAGAGTCATCGAAAGGTGGTGCTACTGATAACCGACGTGAAGCCAGTAACCCACCACGACGAACTAGATTGGTGGAACACGAATCAAACACAACCACAAGTGTGGAAAGGAGTGATTCGGAGCATTATAGACGCAGAAGATCTCACGAAGACTCAAGCAAAAGGCATTATGGGAGAGTTGACTATGGTGTACATAGGAGAACAAACCATGCAATTTTCAAGGATGCATCGCGTACACGAGATCCAGATCTTGGCAAGAAAGTGTGTTCTGGACATGGAAGATCATATCGTGATTCAAGGAAAAGCTGGCAGGACAGGCCACATTTTACATTAGAAAAAGTTGAGACTGGAGGTAGAGGTTTTTCTCACTCATATAGAGAAAAACGTCATGGTCGTTCATATTCACCTGAGGATCTTGATCGAGATAGAGGACGAAGGTTTGGTTGGCGCAACAATAAAGAACCATCACATGGCCGAGGCTTTGATCCTTCTAATGGTTACAAGTATGAAGCGGGTCGTCAAGAGTATACCTCAGGCTCATCCTTCAATCTTAACCAGAGAAATTCTCGATCGAGTTTTAACAAAGAGGAGGATAGATACGGTAAGCAACATTGTGAAAGAAGATATGGCCGTGAAAGAAGTCCTGGACTAGCCTATGAAAGCAACAAAGAAAGAAATCGATATGATGGGGTAGGAGAGCCTTATTATCAGGATCGTATTCCAATAACTGATATGGAATATAGGTACCGGTTTGAGTACTCTTCTACATATGGAAGACATAACCCCAATCAGACTCGCGAGGATGAGCTTCACTATAGGTGTGACTACGATTATGATTTCCCTCGTGGTAGATATGAAGATGAAGTTCACAGGGCAGAAAGTGGAATTCCATTTGAGCTGGCTTACAGGGAGATGCATTCTTTTGCTGAAGTGGGAAGGAGAGAATTTGAAAGGTATGAAGAGGGATTCTCTGAAATAGATAGAAGAGACGACCATTACACACCTGGTTGGCATCATGATAGATTTGTCTCAGAGAACGATGGTCATAAGTACAGAATCCAAGATGATTGGCCATCGCGGTCTTCATTACCATTCAGAGATTCTTGGCAGACAAAAGGATCGAGAGGTGATTCTTGGAGAGATGATACCAGAGACTTCGCAACAAGGGAAGCATATGACAGGCAGAATAATCAGTTGTATAAGGATGCACCAAGAGATGGTTGGACACGAAATCTTGTTGGTAGCGATAAAGTGAGCATACAAGACAGACTAAGGTATGATGATGATGATTGGGTTCGTCGTGATAAAAGGAGATATCAGCTGGGAGATGACATTCAATGTTCTGAGCATCCATCATATACTGATGAAATGATAGTCCCCGACATGAGAGTGACAACACATGATCGAATTTCTATCAAACAAAGACCTGGCTATTTTAAGAGCCATGTTCATGAAACTGATGAAAGACATCAGAGGTCCAAAAAGCTGAGAAGAGATGGGAATGCTTTCACCAAGTGTCAGGATCCGGTTGACTTAACTGGTAGACAAGGGAAGCTCTCTAACCAGTCAAGAAGAAGATTCCCCAATACAACAAGAGATCAGCAACAGAAACAAACAAATGCAGTCGGCGAAAGAAACACGAAAGCTGTTGTGCAGAGACAAGGATTGAATGAGAAAGAGGAAGGTGAGATCATACATGAAGAAGAAGAGAGGAACGTGACAGGGACTGTAATAGACGACGACAGGATACAAGAAAGCATCAAGAAGATGGCGAAACGAAGAGAGAGGTTCAAGGAAACAGAAGTGGTGGTAGCAGCCAAATTTCCTTGCCAAACCGAAGAGGGAGCCAAAACCGATGTTAGCAATCAAATGAGACCGGTTAGGAAGAGGCGATGGTGTGCAAGCTAA
Protein:  
MDSTDDDFGELYVDDKAHATASFAGDVVGCEEPERASISGENEGFEVPVKPESQGEEKKLDVVVVDNKDSSPCVDAVNRTEAKEESEYSDSDDGLNIVLKEDDSKAFPVAFGSNRNNQKRGSGNWCTMPSSGMVNGRMTMEASSANQSLGIPQCGFNFSHTWSRATIDANFNVFEKKPWRNPGMDVNDFFNFGFNEQSWRDYWNPLVKGRAIEVEGGTFERTPSVDLRYPRDLDPDVVIQIPVTNDLEELSSMAHVETRSLSKTSNGASVSEKFHSDIGEDLLSSGDSMKEEVSVGCENEKTGSFRGEQSPSKENYRSREVTPCDKEIIEEEKEETCWSSDKADSSSVERESSLRDHFRCSPTSSYSVGKTEESEDSATESSKGGATDNRREASNPPRRTRLVEHESNTTTSVERSDSEHYRRRRSHEDSSKRHYGRVDYGVHRRTNHAIFKDASRTRDPDLGKKVCSGHGRSYRDSRKSWQDRPHFTLEKVETGGRGFSHSYREKRHGRSYSPEDLDRDRGRRFGWRNNKEPSHGRGFDPSNGYKYEAGRQEYTSGSSFNLNQRNSRSSFNKEEDRYGKQHCERRYGRERSPGLAYESNKERNRYDGVGEPYYQDRIPITDMEYRYRFEYSSTYGRHNPNQTREDELHYRCDYDYDFPRGRYEDEVHRAESGIPFELAYREMHSFAEVGRREFERYEEGFSEIDRRDDHYTPGWHHDRFVSENDGHKYRIQDDWPSRSSLPFRDSWQTKGSRGDSWRDDTRDFATREAYDRQNNQLYKDAPRDGWTRNLVGSDKVSIQDRLRYDDDDWVRRDKRRYQLGDDIQCSEHPSYTDEMIVPDMRVTTHDRISIKQRPGYFKSHVHETDERHQRSKKLRRDGNAFTKCQDPVDLTGRQGKLSNQSRRRFPNTTRDQQQKQTNAVGERNTKAVVQRQGLNEKEEGEIIHEEEERNVTGTVIDDDRIQESIKKMAKRRERFKETEVVVAAKFPCQTEEGAKTDVSNQMRPVRKRRWCAS